Detailed information of SNP:
|
SNP ID:
sf0207187753(Gbrowse)
Chromosome: chr02 Position: 7187753 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 87.89% | 12.11% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 69.09% | 30.91% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 85.59% | 14.41% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207187753 | C->T | INTERGENIC | None |