Detailed information of SNP:
|
SNP ID:
sf0207187961(Gbrowse)
Chromosome: chr02 Position: 7187961 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 90.65% | 9.35% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 479 | 74.53% | 25.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 87.73% | 12.27% |
| Tropical Japonica | 90 | 36.67% | 63.33% |
| Japonica Intermediate | 63 | 60.32% | 39.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207187961 | G->A | INTERGENIC | None |