Detailed information of SNP:
|
SNP ID:
sf0207214824(Gbrowse)
Chromosome: chr02 Position: 7214824 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.19% | 10.81% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 70.39% | 29.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 85.03% | 14.97% |
| Tropical Japonica | 92 | 30.43% | 69.57% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207214824 | C->T | INTERGENIC | None |