Detailed information of SNP:
|
SNP ID:
sf0207217318(Gbrowse)
Chromosome: chr02 Position: 7217318 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.77% | 10.23% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 486 | 71.81% | 28.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 86.67% | 13.33% |
| Tropical Japonica | 90 | 31.11% | 68.89% |
| Japonica Intermediate | 66 | 53.03% | 46.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207217318 | C->T | LOC_Os02g13500(LOC_Os02g13500.1) | SNPs that introduce stop codons |