Detailed information of SNP:



SNP ID: sf0207217318(Gbrowse)

Chromosome: chr02

Position: 7217318
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 89.77% 10.23%
All Indica799 99.75% 0.25%
All Japonica486 71.81% 28.19%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica330 86.67% 13.33%
Tropical Japonica90 31.11% 68.89%
Japonica Intermediate66 53.03% 46.97%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0207217318 C->T LOC_Os02g13500(LOC_Os02g13500.1) SNPs that introduce stop codons