Detailed information of SNP:
|
SNP ID:
sf0207224194(Gbrowse)
Chromosome: chr02 Position: 7224194 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 67.38% | 32.62% |
| All Indica | 797 | 69.01% | 30.99% |
| All Japonica | 490 | 70.41% | 29.59% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 374 | 74.06% | 25.94% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 87 | 26.44% | 73.56% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207224194 | G->A | LOC_Os02g13510(LOC_Os02g13510.1) | Non-Synonymous SNP |