Detailed information of SNP:
|
SNP ID:
sf0207235631(Gbrowse)
Chromosome: chr02 Position: 7235631 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.10% | 17.90% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207235631 | C->T | INTERGENIC | None |