Detailed information of SNP:
|
SNP ID:
sf0207238898(Gbrowse)
Chromosome: chr02 Position: 7238898 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 86.25% | 13.75% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 453 | 62.69% | 37.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 300 | 83.33% | 16.67% |
| Tropical Japonica | 89 | 6.74% | 93.26% |
| Japonica Intermediate | 64 | 43.75% | 56.25% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207238898 | C->A | INTERGENIC | None |