Detailed information of SNP:
|
SNP ID:
sf0207269822(Gbrowse)
Chromosome: chr02 Position: 7269822 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 94.55% | 5.45% |
| All Indica | 776 | 90.34% | 9.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 90.61% | 9.39% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 202 | 93.07% | 6.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207269822 | T->C | INTERGENIC | None |