Detailed information of SNP:
|
SNP ID:
sf0207316810(Gbrowse)
Chromosome: chr02 Position: 7316810 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.19% | 44.81% |
| All Indica | 797 | 84.82% | 15.18% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207316810 | G->C | LOC_Os02g13640(LOC_Os02g13640.1) | INTRON |