Detailed information of SNP:
|
SNP ID:
sf0207335149(Gbrowse)
Chromosome: chr02 Position: 7335149 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.42% | 4.58% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207335149 | A->G | INTERGENIC | None |