Detailed information of SNP:
|
SNP ID:
sf0207368784(Gbrowse)
Chromosome: chr02 Position: 7368784 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 75.36% | 24.64% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 458 | 32.31% | 67.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 314 | 34.71% | 65.29% |
| Tropical Japonica | 80 | 18.75% | 81.25% |
| Japonica Intermediate | 64 | 37.50% | 62.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207368784 | A->G | INTERGENIC | None |