Detailed information of SNP:
|
SNP ID:
sf0207385548(Gbrowse)
Chromosome: chr02 Position: 7385548 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 98.68% | 1.32% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 444 | 96.62% | 3.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 287 | 97.56% | 2.44% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207385548 | C->T | INTERGENIC | None |