Detailed information of SNP:
|
SNP ID:
sf0207433349(Gbrowse)
Chromosome: chr02 Position: 7433349 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 50.71% | 49.29% |
| All Indica | 790 | 15.44% | 84.56% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 14.56% | 85.44% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 206 | 15.53% | 84.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207433349 | G->A | LOC_Os02g13770(LOC_Os02g13770.1) | Synonymous |