Detailed information of SNP:
|
SNP ID:
sf0207449651(Gbrowse)
Chromosome: chr02 Position: 7449651 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1253 | 66.64% | 33.36% |
| All Indica | 637 | 37.52% | 62.48% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 294 | 35.03% | 64.97% |
| Indica II | 175 | 35.43% | 64.57% |
| Indica Intermediate | 168 | 44.05% | 55.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207449651 | T->C | INTERGENIC | None |