Detailed information of SNP:
|
SNP ID:
sf0207453789(Gbrowse)
Chromosome: chr02 Position: 7453789 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 53.43% | 46.57% |
| All Indica | 793 | 91.17% | 8.83% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207453789 | A->C | INTERGENIC | None |