Detailed information of SNP:
|
SNP ID:
sf0207460210(Gbrowse)
Chromosome: chr02 Position: 7460210 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 56.14% | 43.86% |
| All Indica | 776 | 92.78% | 7.22% |
| All Japonica | 451 | 1.55% | 98.45% |
| Aus | 62 | 6.45% | 93.55% |
| Indica I | 371 | 92.72% | 7.28% |
| Indica II | 203 | 94.09% | 5.91% |
| Indica Intermediate | 202 | 91.58% | 8.42% |
| Temperate Japonica | 302 | 1.32% | 98.68% |
| Tropical Japonica | 86 | 2.33% | 97.67% |
| Japonica Intermediate | 63 | 1.59% | 98.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207460210 | T->C | INTERGENIC | None |