Detailed information of SNP:
|
SNP ID:
sf0207527515(Gbrowse)
Chromosome: chr02 Position: 7527515 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 98.55% | 1.45% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 464 | 96.12% | 3.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 79.55% | 20.45% |
| Japonica Intermediate | 49 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207527515 | C->T | INTERGENIC | None |