Detailed information of SNP:
|
SNP ID:
sf0207562985(Gbrowse)
Chromosome: chr02 Position: 7562985 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.81% | 7.19% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207562985 | C->T | LOC_Os02g13910(LOC_Os02g13910.1) | INTRON |