Detailed information of SNP:
|
SNP ID:
sf0207643505(Gbrowse)
Chromosome: chr02 Position: 7643505 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207643505 | A->G | INTERGENIC | None |