Detailed information of SNP:



SNP ID: sf0207665511(Gbrowse)

Chromosome: chr02

Position: 7665511
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 96.18% 3.82%
All Indica797 98.75% 1.25%
All Japonica495 91.52% 8.48%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II211 97.16% 2.84%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica93 75.27% 24.73%
Japonica Intermediate67 79.10% 20.90%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0207665511 C->T INTERGENIC None