Detailed information of SNP:
|
SNP ID:
sf0207679921(Gbrowse)
Chromosome: chr02 Position: 7679921 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.22% | 5.78% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207679921 | C->T | LOC_Os02g14059(LOC_Os02g14059.2) | INTRON |
| sf0207679921 | C->T | LOC_Os02g14059(LOC_Os02g14059.1) | INTRON |