Detailed information of SNP:
|
SNP ID:
sf0207682110(Gbrowse)
Chromosome: chr02 Position: 7682110 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.09% | 37.91% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207682110 | C->T | LOC_Os02g14059(LOC_Os02g14059.2) | INTRON |
| sf0207682110 | C->T | LOC_Os02g14059(LOC_Os02g14059.1) | INTRON |