Detailed information of SNP:



SNP ID: sf0207710651(Gbrowse)

Chromosome: chr02

Position: 7710651
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1410 90.57% 9.43%
All Indica799 97.37% 2.63%
All Japonica490 78.37% 21.63%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 95.31% 4.69%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 90.75% 9.25%
Tropical Japonica89 60.67% 39.33%
Japonica Intermediate66 39.39% 60.61%
Group VI/Aromatic14 92.86% 7.14%
Intermediate40 87.50% 12.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0207710651 T->G LOC_Os02g14110(LOC_Os02g14110.1) UTR_3_PRIME
sf0207710651 T->G LOC_Os02g14120(LOC_Os02g14120.1) UTR_3_PRIME