Detailed information of SNP:
SNP ID:
sf0207710651(Gbrowse)
Chromosome: chr02 Position: 7710651 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1410 | 90.57% | 9.43% |
All Indica | 799 | 97.37% | 2.63% |
All Japonica | 490 | 78.37% | 21.63% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 95.31% | 4.69% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 90.75% | 9.25% |
Tropical Japonica | 89 | 60.67% | 39.33% |
Japonica Intermediate | 66 | 39.39% | 60.61% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0207710651 | T->G | LOC_Os02g14110(LOC_Os02g14110.1) | UTR_3_PRIME |
sf0207710651 | T->G | LOC_Os02g14120(LOC_Os02g14120.1) | UTR_3_PRIME |