Detailed information of SNP:
|
SNP ID:
sf0207793783(Gbrowse)
Chromosome: chr02 Position: 7793783 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.86% | 8.14% |
| All Indica | 792 | 96.21% | 3.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207793783 | G->A | LOC_Os02g14220(LOC_Os02g14220.1) | Synonymous |