Detailed information of SNP:
|
SNP ID:
sf0207839229(Gbrowse)
Chromosome: chr02 Position: 7839229 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 96.56% | 3.44% |
| All Indica | 740 | 95.14% | 4.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 49 | 87.76% | 12.24% |
| Indica I | 349 | 95.42% | 4.58% |
| Indica II | 194 | 93.81% | 6.19% |
| Indica Intermediate | 197 | 95.94% | 4.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207839229 | C->T | INTERGENIC | None |