Detailed information of SNP:
|
SNP ID:
sf0207897909(Gbrowse)
Chromosome: chr02 Position: 7897909 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207897909 | A->G | INTERGENIC | None |