Detailed information of SNP:
|
SNP ID:
sf0207900352(Gbrowse)
Chromosome: chr02 Position: 7900352 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 56.61% | 43.39% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207900352 | G->A | INTERGENIC | None |