Detailed information of SNP:
|
SNP ID:
sf0207916435(Gbrowse)
Chromosome: chr02 Position: 7916435 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 95.04% | 4.96% |
| All Indica | 774 | 91.34% | 8.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 199 | 79.90% | 20.10% |
| Indica Intermediate | 201 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207916435 | C->T | LOC_Os02g14410(LOC_Os02g14410.1) | Non-Synonymous SNP |