Detailed information of SNP:
|
SNP ID:
sf0207916445(Gbrowse)
Chromosome: chr02 Position: 7916445 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 57.47% | 42.53% |
| All Indica | 790 | 88.61% | 11.39% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 209 | 77.03% | 22.97% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207916445 | G->T | LOC_Os02g14410(LOC_Os02g14410.1) | Non-Synonymous SNP |