Detailed information of SNP:
|
SNP ID:
sf0207925709(Gbrowse)
Chromosome: chr02 Position: 7925709 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207925709 | T->A | INTERGENIC | None |