Detailed information of SNP:
|
SNP ID:
sf0207991662(Gbrowse)
Chromosome: chr02 Position: 7991662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 92.13% | 7.87% |
| All Indica | 718 | 85.52% | 14.48% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 75.73% | 24.27% |
| Indica II | 192 | 98.96% | 1.04% |
| Indica Intermediate | 184 | 89.67% | 10.33% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207991662 | G->A | INTERGENIC | None |