Detailed information of SNP:



SNP ID: sf0208020310(Gbrowse)

Chromosome: chr02

Position: 8020310
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 81.81% 18.19%
All Indica799 99.62% 0.38%
All Japonica496 50.20% 49.80%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 56.42% 43.58%
Tropical Japonica93 9.68% 90.32%
Japonica Intermediate68 75.00% 25.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0208020310 T->C INTERGENIC None