Detailed information of SNP:
|
SNP ID:
sf0208020310(Gbrowse)
Chromosome: chr02 Position: 8020310 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 81.81% | 18.19% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 50.20% | 49.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208020310 | T->C | INTERGENIC | None |