Detailed information of SNP:
|
SNP ID:
sf0208023521(Gbrowse)
Chromosome: chr02 Position: 8023521 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 55.31% | 44.69% |
| All Indica | 758 | 33.38% | 66.62% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 353 | 37.96% | 62.04% |
| Indica II | 204 | 20.59% | 79.41% |
| Indica Intermediate | 201 | 38.31% | 61.69% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208023521 | A->G | LOC_Os02g14550(LOC_Os02g14550.1) | INTRON |