Detailed information of SNP:
|
SNP ID:
sf0208069715(Gbrowse)
Chromosome: chr02 Position: 8069715 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.35% | 49.65% |
| All Indica | 796 | 25.25% | 74.75% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 29.41% | 70.59% |
| Indica II | 212 | 11.32% | 88.68% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208069715 | A->G | LOC_Os02g14620(LOC_Os02g14620.1) | INTRON |