Detailed information of SNP:



SNP ID: sf0208100221(Gbrowse)

Chromosome: chr02

Position: 8100221
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 95.20% 4.80%
All Indica799 91.86% 8.14%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 95.20% 4.80%
Indica II213 82.16% 17.84%
Indica Intermediate211 95.73% 4.27%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0208100221 C->T INTERGENIC None