Detailed information of SNP:
|
SNP ID:
sf0208125953(Gbrowse)
Chromosome: chr02 Position: 8125953 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 797 | 41.41% | 58.59% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208125953 | A->T | INTERGENIC | None |