Detailed information of SNP:
|
SNP ID:
sf0208128712(Gbrowse)
Chromosome: chr02 Position: 8128712 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 66.38% | 33.62% |
| All Indica | 797 | 68.26% | 31.74% |
| All Japonica | 487 | 75.77% | 24.23% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 212 | 31.13% | 68.87% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 328 | 85.06% | 14.94% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208128712 | T->C | INTERGENIC | None |