Detailed information of SNP:



SNP ID: sf0208149226(Gbrowse)

Chromosome: chr02

Position: 8149226
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 90.13% 9.87%
All Indica799 83.10% 16.90%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 88.53% 11.47%
Indica II213 69.95% 30.05%
Indica Intermediate211 86.73% 13.27%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0208149226 C->T INTERGENIC None