Detailed information of SNP:
|
SNP ID:
sf0208153830(Gbrowse)
Chromosome: chr02 Position: 8153830 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.80% | 23.20% |
| All Indica | 798 | 71.55% | 28.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 36.79% | 63.21% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208153830 | C->T | INTERGENIC | None |