Detailed information of SNP:
|
SNP ID:
sf0208155989(Gbrowse)
Chromosome: chr02 Position: 8155989 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 89.70% | 10.30% |
| All Indica | 790 | 90.89% | 9.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 208 | 77.40% | 22.60% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208155989 | A->C | INTERGENIC | None |