Detailed information of SNP:
|
SNP ID:
sf0208157048(Gbrowse)
Chromosome: chr02 Position: 8157048 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 51.80% | 48.20% |
| All Indica | 795 | 27.67% | 72.33% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 31.82% | 68.18% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 208 | 35.10% | 64.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208157048 | A->G | INTERGENIC | None |