Detailed information of SNP:
|
SNP ID:
sf0208159231(Gbrowse)
Chromosome: chr02 Position: 8159231 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.99% | 49.01% |
| All Indica | 799 | 26.78% | 73.22% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208159231 | T->C | INTERGENIC | None |