Detailed information of SNP:
|
SNP ID:
sf0208170111(Gbrowse)
Chromosome: chr02 Position: 8170111 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 76.63% | 23.37% |
| All Indica | 781 | 70.93% | 29.07% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 66.67% | 33.33% |
| Indica II | 209 | 85.65% | 14.35% |
| Indica Intermediate | 203 | 63.55% | 36.45% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208170111 | C->T | INTERGENIC | None |