Detailed information of SNP:
|
SNP ID:
sf0208191412(Gbrowse)
Chromosome: chr02 Position: 8191412 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1187 | 93.85% | 6.15% |
| All Indica | 639 | 94.37% | 5.63% |
| All Japonica | 432 | 91.67% | 8.33% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 287 | 94.43% | 5.57% |
| Indica II | 194 | 95.88% | 4.12% |
| Indica Intermediate | 158 | 92.41% | 7.59% |
| Temperate Japonica | 325 | 97.23% | 2.77% |
| Tropical Japonica | 54 | 59.26% | 40.74% |
| Japonica Intermediate | 53 | 90.57% | 9.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208191412 | T->C | INTERGENIC | None |