Detailed information of SNP:
|
SNP ID:
sf0208194725(Gbrowse)
Chromosome: chr02 Position: 8194725 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1280 | 93.12% | 6.87% |
| All Indica | 708 | 91.95% | 8.05% |
| All Japonica | 451 | 94.24% | 5.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 323 | 91.33% | 8.67% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 180 | 90.00% | 10.00% |
| Temperate Japonica | 325 | 98.77% | 1.23% |
| Tropical Japonica | 69 | 71.01% | 28.99% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208194725 | C->T | INTERGENIC | None |