Detailed information of SNP:
SNP ID:
sf0208199704(Gbrowse)
Chromosome: chr02 Position: 8199704 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 78.51% | 21.49% |
All Indica | 799 | 74.72% | 25.28% |
All Japonica | 497 | 80.89% | 19.11% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 71.73% | 28.27% |
Indica II | 213 | 86.85% | 13.15% |
Indica Intermediate | 211 | 67.77% | 32.23% |
Temperate Japonica | 335 | 95.82% | 4.18% |
Tropical Japonica | 94 | 34.04% | 65.96% |
Japonica Intermediate | 68 | 72.06% | 27.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0208199704 | T->C | LOC_Os02g14780(LOC_Os02g14780.1) | UTR_3_PRIME |
sf0208199704 | T->C | LOC_Os02g14780(LOC_Os02g14780.2) | INTRON |