Detailed information of SNP:
|
SNP ID:
sf0208200174(Gbrowse)
Chromosome: chr02 Position: 8200174 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.43% | 26.57% |
| All Indica | 799 | 66.46% | 33.54% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208200174 | T->C | LOC_Os02g14780(LOC_Os02g14780.2) | UTR_3_PRIME |