Detailed information of SNP:
|
SNP ID:
sf0208200667(Gbrowse)
Chromosome: chr02 Position: 8200667 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.42% | 21.58% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 71.73% | 28.27% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208200667 | G->A | INTERGENIC | None |