Detailed information of SNP:
|
SNP ID:
sf0208214478(Gbrowse)
Chromosome: chr02 Position: 8214478 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 59.29% | 40.71% |
| All Indica | 787 | 40.79% | 59.21% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 371 | 51.21% | 48.79% |
| Indica II | 206 | 18.93% | 81.07% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208214478 | A->G | LOC_Os02g14800(LOC_Os02g14800.4) | UTR_3_PRIME |
| sf0208214478 | A->G | LOC_Os02g14800(LOC_Os02g14800.5) | UTR_3_PRIME |
| sf0208214478 | A->G | LOC_Os02g14800(LOC_Os02g14800.2) | INTRON |
| sf0208214478 | A->G | LOC_Os02g14800(LOC_Os02g14800.3) | INTRON |
| sf0208214478 | A->G | LOC_Os02g14800(LOC_Os02g14800.1) | INTRON |