Detailed information of SNP:
|
SNP ID:
sf0208223978(Gbrowse)
Chromosome: chr02 Position: 8223978 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 61.58% | 38.42% |
| All Indica | 777 | 87.13% | 12.87% |
| All Japonica | 491 | 14.46% | 85.54% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 83.20% | 16.80% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 89 | 56.18% | 43.82% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208223978 | T->C | INTERGENIC | None |